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annotate bin/_runme.sh @ 39:8661062a50b1

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moved from home bin
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Wed, 05 Jul 2023 15:09:57 +0100
parents e3c440666f1a
children 316495371bbc
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b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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1 #!/bin/bash
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2 # This runs on the compute nodes...
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3 # Args: wd [-b CMDS] [-i input] CMDS
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e3c440666f1a doc pointer
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4 # See ug4/azure/notes.txt for documentation
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5
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6 N=$SLURM_JOB_NUM_NODES
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7 n=$SLURM_NTASKS
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8 c=$SLURM_CPUS_PER_TASK
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9 nodename=$SLURMD_NODENAME
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10 local=$SLURM_LOCALID
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11 node=$SLURM_NODEID
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12 task=$SLURM_PROCID
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13
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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14 cd "$1"
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15 shift
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16
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17 threadsPerTask=2
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18 pjobs=$((c / $threadsPerTask))
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19
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20 echo $(date) task $n.$task on $nodename:$N.$node start $(pwd) 1>&2
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21
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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22 PATH=$W/$USER/bin:$W/shared/bin:$PATH
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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23 export task PATH n
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24
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25 if [ "$1" = "-b" ]
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26 then
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27 shift
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28 eval "$1"
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29 shift
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30 fi
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31
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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32 if [ "$1" = "-i" ]
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33 then
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34 shift
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35 input="$1"
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36 shift
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37 fi
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38
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39 export cmd="$1"
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40 shift
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41
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42 doit () {
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43 arg="$1"
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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44 echo $(date) start $task $PARALLEL_SEQ $arg
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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45 eval "$cmd"
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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46 echo $(date) end $task $PARALLEL_SEQ
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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47 }
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48
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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49 export -f doit
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50
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51 eval "$input" | \
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52 parallel -j $pjobs doit '{}'
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53
b4801f5696b2 compute node workers, see cirrus_home/bin repo for login node masters
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54 echo $(date) task $n.$task on $nodename:$N.$node end 1>&2
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