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annotate bin/do_idx.sh @ 103:7d58dc01f329

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re-instate logging splits for .idx
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Wed, 13 Sep 2023 12:40:39 +0100
parents e2e64c3d763e
children 9403c02d5034
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
101
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
Henry S. Thompson <ht@inf.ed.ac.uk>
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1 #!/bin/bash
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
Henry S. Thompson <ht@inf.ed.ac.uk>
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2 export res="$1"
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
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3 orig="$2"
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7d58dc01f329 re-instate logging splits for .idx
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 101
diff changeset
4 merge_date.py <(LC_ALL=C sort -m -k1,2 -s $res/ks_[0-9]*.tsv) $orig $res/idx |\
101
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
Henry S. Thompson <ht@inf.ed.ac.uk>
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5 parallel -j 10 'echo {#} {} >$res/merge_{#}.log
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
Henry S. Thompson <ht@inf.ed.ac.uk>
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6 echo $(date) {#} {}
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
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7 export res
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
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8 split -l 3000 --filter="igzip -c | \
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
Henry S. Thompson <ht@inf.ed.ac.uk>
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9 tee >(wc -c >> \
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
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10 $res/merge_{#}.log)" \
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
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11 {} > {}.gz && \
e2e64c3d763e bug4 fixed, but that created a new, earlier bug
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12 rm {}'