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changeset 51:427056f1784e

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a few tweaks after 2nd parallel run
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Sat, 11 Apr 2020 13:41:46 +0100
parents 5de261eb0deb
children 9cd9daf75183
files bin/preExtract.sh
diffstat 1 files changed, 2 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/bin/preExtract.sh	Fri Apr 10 18:45:30 2020 +0100
+++ b/bin/preExtract.sh	Sat Apr 11 13:41:46 2020 +0100
@@ -36,8 +36,8 @@
     function sus () { sort "$@" | uniq -c | sort -k1nr,1 ; }
     s={1}
     p={2}
-    mkdir -p $s/logs
-    cd $s
+    mkdir -p /dev/shm/rex/$s/logs
+    cd /dev/shm/rex/$s
     echo $(date) starting $s/$p > log
     # Sigh, should not have used this in the extraction ...
     jobid=$(tar -tf ${h}/${s}/extract_0.tar logs/ | head -1 | \
@@ -90,13 +90,11 @@
                :
               else
 		echo " " "extra lines in ${e}_check.txt" >> log
-		cd ..
 		continue
               fi
 	  elif [ $(fgrep -c a ${e}_check.txt) -ne $ni ]
 	  then
 	      echo " " "non-addition lines in ${e}_check.txt" >> log
-	      cd ..
 	      continue
 	  fi
           echo " " starting tar update >> log
@@ -107,6 +105,4 @@
           echo "no diff, no update" $e >> log
         fi
         echo end extract: $e >> log
-   done
-    cd ..
 '