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comparison bin/doExtract.sh @ 29:a95a1b31f5e9

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try to fix multi-line lossage
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Wed, 18 Mar 2020 21:54:47 +0000
parents 7a2bc060230d
children 1e479e3ea9c4
comparison
equal deleted inserted replaced
28:70c04a452599 29:a95a1b31f5e9
1 #!/bin/bash 1 #!/bin/bash
2 # Usage extract.sh ccid jobid segid 2 # Usage doExtract.sh ccid jobid segid
3 ccid=$1 3 ccid=$1
4 jobid=$2 4 export jobid=$2
5 segid=$3 5 segid=$3
6 echo $(date) $(hostname) $jobid $segid 6 echo $(date) $(hostname) $jobid $segid
7 mkdir -p $segid/logs 7 mkdir -p $segid/logs
8 cd $segid 8 cd $segid
9 ls /beegfs/common-crawl/CC-MAIN-${ccid}/${segid}/CC-MAIN-*.warc.gz | \ 9 ls /beegfs/common_crawl/CC-MAIN-${ccid}/${segid}/CC-MAIN-*.warc.gz | \
10 parallel -j 12 -N 1 '{ 10 parallel -j 12 -N 1 id=$(echo {} | cut -f 6 -d / | cut -f 3- -d - | cut -f 1 -d .) \; \
11 id=$(echo {} | cut -f 6 -d / | cut -f 3- -d - | cut -f 1 -d .) 11 echo starting \$id \$(date) >> logs/${jobid}_{#}_log \; \
12 echo starting $id $(date) >> logs/${jobid}_{#}_log 12 unpigz -dp 1 -c {} | $HOME/lib/valhalla/bin/warc.sh ${id} application/pdf 2>> logs/${jobid}_{#}_log \; \
13 unpigz -dp 1 -c {} | $HOME/lib/valhalla/bin/warc.sh ${id} application/pdf 2>> logs/${jobid}_{#}_log
14 echo finished ${id} $(date) >> logs/${jobid}_{#}_log 13 echo finished ${id} $(date) >> logs/${jobid}_{#}_log
15 }' 14 res=$?
16 echo $(date) $(hostname) $jobid $segid $? 15 echo $(date) $(hostname) $jobid $segid $res
17 tar -cf /beegfs/common-crawl/CC-MAIN-${ccid}/${segid}/extracts.tar * 16 if [ $res = 0 ]
18 echo $(date) $(hostname) $jobid /beegfs/common-crawl/CC-MAIN-${ccid}/${segid}/extracts.tar 17 then
18 tar -cf /beegfs/common_crawl/CC-MAIN-${ccid}/${segid}/extracts.tar *
19 echo $(date) $(hostname) $jobid /beegfs/common_crawl/CC-MAIN-${ccid}/${segid}/extracts.tar
20 fi