view bin/doExtract.sh @ 27:7a2bc060230d

first cut at doing extraction here
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Wed, 18 Mar 2020 15:23:53 +0000
parents
children a95a1b31f5e9
line wrap: on
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#!/bin/bash
# Usage extract.sh ccid jobid segid
ccid=$1
jobid=$2
segid=$3
echo $(date) $(hostname) $jobid $segid
mkdir -p $segid/logs
cd $segid
ls /beegfs/common-crawl/CC-MAIN-${ccid}/${segid}/CC-MAIN-*.warc.gz | \
parallel -j 12 -N 1 '{
    id=$(echo {} | cut -f 6 -d / | cut -f 3- -d - | cut -f 1 -d .)
    echo starting $id $(date) >> logs/${jobid}_{#}_log
    unpigz -dp 1 -c {} | $HOME/lib/valhalla/bin/warc.sh ${id} application/pdf 2>> logs/${jobid}_{#}_log
    echo finished ${id} $(date) >> logs/${jobid}_{#}_log
   }'
echo $(date) $(hostname) $jobid $segid $?
tar -cf /beegfs/common-crawl/CC-MAIN-${ccid}/${segid}/extracts.tar *
echo $(date) $(hostname) $jobid /beegfs/common-crawl/CC-MAIN-${ccid}/${segid}/extracts.tar