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comparison bin/test.sh @ 167:3213a8bb2ed1

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new style batch jobs, see cirrus_work repo for _xxx.sh
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Mon, 18 Jul 2022 19:16:20 +0100
parents 11d973ecff4e
children
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166:afd7879181c9 167:3213a8bb2ed1
1 #!/usr/bin/bash 1 #!/usr/bin/bash
2 # Invoke this as e.g. sbatch --time=00:05:00 [--exclusive] -N 2 --ntasks-per-node 2 -c 2 masterJob.sh test 2 # Invoke this as e.g. sbatch --time=00:05:00 [--exclusive] --ntasks=6 -c 13 ~/bin/test.sh
3 # run doTest.sh in parallel on 2 nodes, 2 tasks each, with input from test/n.t.txt 3 # run _test.sh in parallel on 3 nodes, 2 tasks each
4 n=$SLURM_NTASKS
5 c=$SLURM_CPUS_PER_TASK
6 nodename=$SLURMD_NODENAME
7 task=$SLURM_LOCALID
8 node=$SLURM_NODEID
9 echo $(date) $nodename:$node:$task start
10 4
11 #type parallel 5 #SBATCH --time=00:01:00
12 #module load gnu-parallel 6 #SBATCH --partition=standard
7 #SBATCH --qos=standard
8 #SBATCH --account=ec184-guest
9 #SBATCH --job-name test
13 10
14 export PYTHONPATH=$PYTHONPATH:$HOME/lib/python 11 export W=/work/dc007/dc007
15 parallel --will-cite -j $c dotest.sh $node $task '{}' < test.$node.$task.txt
16 12
17 echo $(date) $nodename:$node:$task end 13 echo $(date) Launching $SLURM_JOB_NUM_NODES nodes for test "$@" from $(hostname) to do $SLURM_NTASKS tasks, $SLURM_CPUS_PER_TASK cpus each
18 14
15 srun -c $SLURM_CPUS_PER_TASK $W/shared/bin/sing $W/hst/bin/_test.sh "$@"
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