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annotate bin/test.sh @ 158:f5e2211b50bd

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do whole line
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Wed, 06 Jul 2022 18:00:53 +0100
parents 11d973ecff4e
children 3213a8bb2ed1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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Henry S. Thompson <ht@inf.ed.ac.uk>
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1 #!/usr/bin/bash
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2 # Invoke this as e.g. sbatch --time=00:05:00 [--exclusive] -N 2 --ntasks-per-node 2 -c 2 masterJob.sh test
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3 # run doTest.sh in parallel on 2 nodes, 2 tasks each, with input from test/n.t.txt
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4 n=$SLURM_NTASKS
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5 c=$SLURM_CPUS_PER_TASK
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6 nodename=$SLURMD_NODENAME
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7 task=$SLURM_LOCALID
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8 node=$SLURM_NODEID
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9 echo $(date) $nodename:$node:$task start
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10
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11 #type parallel
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12 #module load gnu-parallel
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13
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14 export PYTHONPATH=$PYTHONPATH:$HOME/lib/python
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15 parallel --will-cite -j $c dotest.sh $node $task '{}' < test.$node.$task.txt
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17 echo $(date) $nodename:$node:$task end
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