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annotate bin/runme_c.sh @ 185:acae526510e2

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too many overdue updates to break down
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Wed, 06 Dec 2023 13:38:58 +0000
parents 53a8ffe06460
children
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53a8ffe06460 use csing, and _runme_c.sh to get it initialised
Henry S. Thompson <ht@inf.ed.ac.uk>
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1 #!/usr/bin/bash
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2 # Invoke this as e.g. sbatch --ntasks=10 -c 20 runme.sh [-m ( '{...}' | first last)] [args for work/bin/_runme.sh]
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53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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3 # It will run on the login node
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4 # -m i j will launch _runme.sh multiple times with a -a in {...} or {first..last}
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53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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5
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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6 #SBATCH --time=01:00:00
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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7 #SBATCH --partition=standard
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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8 #SBATCH --qos=standard
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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9 #SBATCH --account=ec184-hst
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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10 #SBATCH --job-name runme
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11
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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12 export W=/work/dc007/dc007
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13
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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14 if [ "$1" = "-m" ]
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15 then
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16 shift
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17 if [[ "$1" == {*} ]]
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18 then
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19 ss="$1"
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20 shift
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21 else
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22 ss={$1..$2}
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23 shift; shift
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24 fi
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53a8ffe06460 use csing, and _runme_c.sh to get it initialised
Henry S. Thompson <ht@inf.ed.ac.uk>
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25 echo $(date) Launching $SLURM_JOB_NUM_NODES nodes in $(pwd) for runme_c -a $ss "$@" from $(hostname) to do $SLURM_NTASKS tasks, $SLURM_CPUS_PER_TASK cpus each 1>&2
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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26 for i in $(eval echo $ss)
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27 do
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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28 srun --unbuffered -c $SLURM_CPUS_PER_TASK $W/shared/bin/csing $W/hst/bin/_runme_c.sh -a $i "$@"
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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29 echo $(date) Finished $i
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30 done
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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31 else
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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32 echo $(date) Launching $SLURM_JOB_NUM_NODES nodes in $(pwd) for runme_c "$@" from $(hostname) to do $SLURM_NTASKS tasks, $SLURM_CPUS_PER_TASK cpus each 1>&2
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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33
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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34 srun --unbuffered -c $SLURM_CPUS_PER_TASK $W/shared/bin/csing $W/hst/bin/_runme_c.sh "$@"
53a8ffe06460 use csing, and _runme_c.sh to get it initialised
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35 echo $(date) Finished
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36 fi