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annotate bin/plinks.py @ 2:83ed7c5846b2

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author Henry Thompson <ht@markup.co.uk>
date Tue, 18 Feb 2020 22:19:51 +0000
parents a4b0359456bc
children cbd13beb0922 462179da7dc2
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65a56c0d1c1f bolting the barn door...
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
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1 #!/lustre/sw/miniconda3/bin/python3
65a56c0d1c1f bolting the barn door...
Henry S. Thompson <ht@inf.ed.ac.uk>
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2 import sys,pdfx,traceback
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a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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3 from os import path
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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4
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
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5 def run(file):
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65a56c0d1c1f bolting the barn door...
Henry S. Thompson <ht@inf.ed.ac.uk>
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6 global pdf
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a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
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7 pdf=pdfx.PDFx(file)
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
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8 return pdf.get_references_as_dict()
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65a56c0d1c1f bolting the barn door...
Henry S. Thompson <ht@inf.ed.ac.uk>
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9
1
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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10 me=sys.argv[1]
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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11 with open('/dev/shm/x/badpdfs_%s'%me,'w') as bf:
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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12 for l in sys.stdin:
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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13 (fno,f)=l.rstrip().split()
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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14 try:
2
Henry Thompson <ht@markup.co.uk>
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15 links=run(f)
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a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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16 with open('/dev/shm/x/links_%s'%fno,'w') as of:
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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17 for k in links.keys():
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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18 for l in links[k]:
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Henry Thompson <ht@markup.co.uk>
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19 print("%s\t%s"%(k,l),file=of)
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a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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20 except Exception as e:
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Henry Thompson <ht@markup.co.uk>
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21 print("%s\t%s"%(fno,e),file=bf)
1
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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22 if (path.exists('/dev/shm/stopJob')):
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
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23 print("Quiting early: %s %s"%(me,fno),file=sys.stderr)
a4b0359456bc switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
Henry Thompson <ht@markup.co.uk>
parents: 0
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24 exit(1)