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annotate bin/extract.sh @ 27:7a2bc060230d

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first cut at doing extraction here
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Wed, 18 Mar 2020 15:23:53 +0000
parents a82c325e8b32
children a95a1b31f5e9
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27
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
diff changeset
1 #!/usr/bin/bash
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
diff changeset
2 # Launch parallel tasks, one per segment from extract_?.txt
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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3 echo $(date) $(hostname)
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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4 h=$(hostname)
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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5 hn=${h##*n}
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Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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6 head -1 extract_${hn}.txt |\
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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7 { read cc
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Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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8 tail -n +2 extract_${hn}.txt |\
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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9 parallel --will-cite -j 4 -N 1 $HOME/bin/doExtract.sh "$cc" '{#}' '{}'
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
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10 }
7a2bc060230d first cut at doing extraction here
Henry S. Thompson <ht@inf.ed.ac.uk>
parents: 25
diff changeset
11 echo $(date) $(hostname) $?