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annotate bin/doExtract.sh @ 31:6f28ac7d5255

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author Henry S. Thompson <ht@inf.ed.ac.uk>
date Thu, 19 Mar 2020 13:13:35 +0000
parents 1e479e3ea9c4
children 4c23b1766692
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1 #!/bin/bash
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2 # Usage doExtract.sh ccid jobid segid
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3 ccid=$1
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4 export jobid=$2
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5 segid=$3
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6 echo $(date) $(hostname) $jobid $segid
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7 mkdir -p $segid/logs
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8 cd $segid
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9 ls /beegfs/common_crawl/CC-MAIN-${ccid}/${segid}/CC-MAIN-*.warc.gz | \
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10 parallel --joblog job_${jobid}.log -j 12 -N 1 'id=$(echo {} | cut -f 6 -d / | cut -f 3- -d - | cut -f 1 -d .) ; \
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11 echo starting $id $(date) >> logs/${jobid}_{#}_log ; \
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12 unpigz -dp 1 -c {} | $HOME/lib/valhalla/bin/warc.sh ${id} application/pdf 2>> logs/${jobid}_{#}_log ; \
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13 echo finished ${id} $(date) >> logs/${jobid}_{#}_log'
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14 res=$?
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15 echo $(date) $(hostname) $jobid $segid $res
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16 if [ $res = 0 ]
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17 then
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18 tar -cf /beegfs/common_crawl/CC-MAIN-${ccid}/${segid}/extracts.tar *
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19 echo $(date) $(hostname) $jobid /beegfs/common_crawl/CC-MAIN-${ccid}/${segid}/extracts.tar
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20 fi