Mercurial > hg > cc > cirrus_home
annotate plinksJob.sh @ 198:3910d035efb1
csing -> sing
| author | Henry S. Thompson <ht@inf.ed.ac.uk> |
|---|---|
| date | Sat, 28 Feb 2026 11:47:19 +0000 |
| parents | 29263ba42361 |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/bin/bash |
|
12
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
2 # Usage: qsub -v t1=1stTar,tn=numTars plinksJob.sh |
| 0 | 3 #PBS -l select=2:ncpus=36 |
| 4 #PBS -l place=exclhost | |
| 5 #PBS -l walltime=08:00:00 | |
| 6 #PBS -V | |
| 7 #PBS -A dc007 | |
| 8 #PBS -N plinks | |
| 9 | |
| 11 | 10 #module load mpt |
| 0 | 11 |
| 12 cd ${PBS_O_WORKDIR} | |
|
12
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
13 ((n1=tn/2)) |
|
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
14 ((s1=t1)) |
|
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
15 ((s2=t1+n1)) |
|
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
16 ((e1=s2-1)) |
|
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
17 ((e2=s1+tn-1)) |
|
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
18 echo $(seq --format="%03.0f" $s1 $e1),$(seq --format="%03.0f" $s2 $e2) |
| 0 | 19 |
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12
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
20 bin/plinksMaster.sh $s1 $e1 $s2 $e2 |
|
29263ba42361
add args for start tar and number of tars
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
11
diff
changeset
|
21 |
