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annotate cc.def @ 0:f5509fb303f6

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ccr version from 2022-06-14
author Henry S Thompson <ht@inf.ed.ac.uk>
date Thu, 15 Aug 2024 12:43:22 +0100
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children 19b134ea79c8
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f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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1 Bootstrap: docker
f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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2 From: debian:bullseye
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3
f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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4 %post
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5 sed '2s/main/main contrib non-free/' -i /etc/apt/sources.list
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6 apt-get -y update
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Henry S Thompson <ht@inf.ed.ac.uk>
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7 apt-get -y install locales
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Henry S Thompson <ht@inf.ed.ac.uk>
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8 sed '/en_GB.UTF/s/# //;/en_US.UTF/s/# //' -i /etc/locale.gen
f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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9 locale-gen
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Henry S Thompson <ht@inf.ed.ac.uk>
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10 apt-get -y install apt-utils python3 python3-pip isal less git ack procps psmisc
f5509fb303f6 ccr version from 2022-06-14
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11 apt-get -y install man-db gdb gcc
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12
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Henry S Thompson <ht@inf.ed.ac.uk>
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13 pip3 install six isal regex chardet stopit urllib3 cryptography
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14
f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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15 sed '8i\
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Henry S Thompson <ht@inf.ed.ac.uk>
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16 if [ "$WSHARED" ]\
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Henry S Thompson <ht@inf.ed.ac.uk>
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17 then\
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18 PATH="$WSHARED/bin:$PATH"\
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Henry S Thompson <ht@inf.ed.ac.uk>
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19 fi\
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Henry S Thompson <ht@inf.ed.ac.uk>
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20 ' -i /etc/profile
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21
f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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22 # REMEMBER to check cc/etc/profile has $WSHARED/bin in front of PATH
f5509fb303f6 ccr version from 2022-06-14
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23
f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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24 %environment
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Henry S Thompson <ht@inf.ed.ac.uk>
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25 export WSHARED=/work/dc007/dc007/shared
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26 export HOME=/work/dc007/dc007/$(whoami)
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27 export SINGULARITY_SHELL=/usr/bin/bash
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28 export LESSOPEN="| /usr/bin/lesspipe %s";
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29 export LESSCLOSE="/usr/bin/lesspipe %s %s";
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30 export PS1='\[\033[1m\]sing\[\033[0m\]<\!>: '
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31
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Henry S Thompson <ht@inf.ed.ac.uk>
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32 %runscript
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Henry S Thompson <ht@inf.ed.ac.uk>
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33 #!/bin/bash
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Henry S Thompson <ht@inf.ed.ac.uk>
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34 if [ -f $WSHARED/.bash_extras ]
f5509fb303f6 ccr version from 2022-06-14
Henry S Thompson <ht@inf.ed.ac.uk>
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35 then
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Henry S Thompson <ht@inf.ed.ac.uk>
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36 . $WSHARED/.bash_extras
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37 fi
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38
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Henry S Thompson <ht@inf.ed.ac.uk>
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39 cd $HOME
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40
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Henry S Thompson <ht@inf.ed.ac.uk>
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41 if [ $# -gt 0 ]
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42 then
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43 exec "$@"
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Henry S Thompson <ht@inf.ed.ac.uk>
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44 else
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Henry S Thompson <ht@inf.ed.ac.uk>
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45 exec /bin/bash -ls
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Henry S Thompson <ht@inf.ed.ac.uk>
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46 fi