view bin/spearman.py @ 25:50337cd1d16f

framework for stats over results of rank correlations
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Mon, 14 Nov 2022 18:52:35 +0000
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children 5c5440e7854a
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#!/usr/bin/env python3
import numpy as np
from numpy import loadtxt
from scipy import stats
import statsmodels.api as sm
import pylab

import sys

cc19=loadtxt(sys.argv[1],delimiter=',')
cc19s_o=stats.spearmanr(cc19,nan_policy='omit')
cc19s_x=np.array([np.concatenate((cc19s_o.correlation[i][1:i],cc19s_o.correlation[i][i+1:])) for i in range(1,101)])