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annotate bin/cdbp.sh @ 296:9608fe0628b0

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author Henry S. Thompson <ht@inf.ed.ac.uk>
date Mon, 05 May 2025 20:39:16 +0100
parents 25d49e1f6c1d
children 13414b0dfefb
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25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
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1 #!/usr/bin/bash
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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2 # One cdb pipeline step, doing 1/17th of the work
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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3 # Usage: cdbp.sh i
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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4 # where i is the 0-origin index of a 17th, so e.g. cdbp.sh 2 will run
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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5 # test_cdbp.py ... ks_%d-%d.cdb 2 3 12 18
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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6 i=$1
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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7 k1=$((i * 6))
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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8 k2=$(((i + 1) * 6))
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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9 k2=$((k2 > 100 ? 100 : k2))
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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10 echo wc -l $(printf ks_%d-%d.cdb $k1 $((k2 - 1))) 1>&2
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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11 wc -l $(printf ks_%d-%d.cdb $k1 $((k2 - 1))) 1>&2
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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12 python3 -c 'import test_cdbp;test_cdbp.mainp()' ks_%d-%d.cdb $i $((i + 1)) $k1 $k2
25d49e1f6c1d automate a cdb chain
Henry S. Thompson <ht@inf.ed.ac.uk>
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13