annotate bin/ix.py @ 18:046dbe557911

write to tmp file implemented
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Sun, 07 Aug 2022 13:58:33 +0100
parents
children cbac7dfe2f24
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18
046dbe557911 write to tmp file implemented
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1 #!/usr/bin/env python3
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2 '''Extract request records from Common Crawl WARC-format files
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3 given length, offset and filename triples.
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4 Input one triple on command line, or
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5 triples from stdin as tab-delimited lines
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6 or complete cdx index lines.
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7 In all cases by 'filename' is meant crawlid/segmentid/type/filename
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8
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9 Note that if no output flag(s) is/are given, the whole WARC record will be output, more efficiently than would be the case if -whb is given.'''
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10
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11 import sys, argparse, regex, os, shutil, io, gzip, time, shlex
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12 from isal import igzip
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13 from subprocess import Popen, PIPE
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14 #import asyncio
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15
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16 HACK_USAGE=regex.compile('\[-x\]\n\s*\[length\] \[offset\] \[filename\]')
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17 BINOUT=sys.stdout.buffer
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18 FPAT="/%s/%s/orig/%s/%s"
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19
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20 CMD_PROC=None
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21 TMPFILENAME=None
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22
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23 class HackFormat(argparse.RawDescriptionHelpFormatter):
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24 def format_help(self):
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25 FOO=argparse.RawDescriptionHelpFormatter.format_help(self)
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26 return HACK_USAGE.sub('\n [ ( -x | length offset filename ) ]',
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27 FOO)
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28
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29 def process(options,buf,filename,offset,length,whole):
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30 global CMD_PROC, BINOUT, TMPFILENAME, TMPFILE
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31 if options.save:
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32 (tf,TMPFILENAME)=tempfile.mkstemp()
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33 TMPFILE=open(tf,mode='wb')
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34 if options.cmd:
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35 CMD_PROC=Popen(shlex.split(options.cmd),stdin=PIPE,bufsize=0)
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36 BINOUT=CMD_PROC.stdin
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37 process1(options,buf,filename,offset,length,whole)
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38 if options.save:
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39 TMPFILE.close()
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40 if options.cmd:
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41 _output_subproc(bytes(TMPFILENAME,'utf-8'))
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42 _output_subproc(b"\n")
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43 else:
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44 BINOUT.write(bytes(TMPFILENAME,'utf-8'))
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45 BINOUT.write(b"\n")
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46 if options.cmd:
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47 # Wind up subproc
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48 BINOUT.close()
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49 if CMD_PROC.wait()!=0: # could/should be async?
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50 print("subproc of %s:%s:%s failed with %s"%(length,offset,filename,
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51 CMD_PROC.returncode),
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52 file=sys.stderr)
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53 if options.save:
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54 # not if async?
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55 os.unlink(TMPFILENAME)
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56 TMPFILENAME=None
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57 elif options.save:
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58 print("%s will need to be deleted"%TMPFILENAME,file=sys.stderr)
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59 TMPFILENAME=None
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60
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61 def _output_tmpfile(buf):
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62 TMPFILE.write(buf)
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63
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64 def _output_stdout(buf):
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65 BINOUT.write(buf)
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66
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67 def _output_subproc(buf):
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68 toWrite=len(buf)
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69 while toWrite>0:
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70 toWrite -= BINOUT.write(buf)
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71
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72 def process1(options,buf,filename,offset,length,whole):
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73 root=options.root
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74 rfn=root+filename
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75 if root!="/beegfs/common_crawl":
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76 # Support using ramdisk or other local disk as a faster cached
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77 if not os.path.exists(rfn):
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78 if not os.path.exists(os.path.dirname(rfn)):
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79 os.makedirs(os.path.dirname(rfn))
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80 with io.FileIO('/beegfs/common_crawl'+filename,'r') as infile, \
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81 io.FileIO(rfn,'w') as outfile:
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82 #shutil.copyfileobj(infile,outfile,128*1024*1024)
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83 while True:
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84 l=infile.readinto(buf)
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85 if l==0:
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86 break
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87 outfile.write(memoryview(buf)[:l])
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88 file=open(rfn,'rb',0)
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89 file.seek(offset)
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90 bv=memoryview(buf)[:length]
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91 nb=file.readinto(bv)
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92 file.close()
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93 if nb!=length:
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94 raise ValueError("Chunk read losing: %s, got %s expected %s at %s"%(file.name,
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95 nb,length,offset))
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96 if whole and options.zipped:
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97 _output(bv)
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98 return
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99 gzip_chunk = io.BytesIO(bv)
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100 uv=memoryview(buf)[length:]
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101 with igzip.IGzipFile(fileobj=gzip_chunk) as gzip_fin:
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102 ll=0
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103 while True:
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104 l=gzip_fin.readinto(uv)
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105 if not l:
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106 break
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107 ll+=l
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108 cb=memoryview(uv)[:ll]
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109 if whole:
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110 _output(cb)
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111 return
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112 # Only output parts (0 = WARC header, 1 = HTTP header, 2 = body) that are wanted
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113 state=0
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114 tr=None # Was this record truncated?
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115 bl=None # for HTTP Content-Length for the length of the body?
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116 with io.BytesIO(cb) as clear_text:
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117 for L in clear_text:
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118 if state==0:
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119 # WARC header
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120 if L.startswith(b"Content-Length: "):
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121 wl=int(L[16:].rstrip())
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122 elif L.startswith(b"WARC-Truncated: "):
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123 tr=L[16:].rstrip()
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124 tr="EMPTY" if tr=="" else tr
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125 elif L==b"" or L.startswith(b"\r"): # for idempotency
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126 # Blank line, WARC header is finished
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127 if not (options.headers or options.body):
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128 return
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129 state=1
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130 # Note we preserve the empty line
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131 if options.warc:
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132 _output(L)
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133 continue
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134 if state==1:
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135 # HTTP header
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136 wl -= len(L)
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137 if not (L==b"" or L.startswith(b"\r")):
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138 # Non-blank, it's a header
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139 if bl is None and L.startswith(b"Content-Length: "):
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140 bl=int(L[16:].rstrip())
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141 if options.headers:
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142 _output(L)
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143 else:
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144 # Blank line, HTTP header is finished
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145 if not options.body:
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146 return
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147 if options.headers:
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148 _output(L)
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149 state=2
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150 # The above is just for sanity, because we do _not_
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151 # continue with the outer loop,
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152 # since we can now block-output the entire rest of the
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153 # input buffer.
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154 if bl is not None:
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155 if bl!=wl:
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156 print("length mismatch: %s %s %s here: %s given: %s trunc: %s"%\
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157 (length,offset,filename,wl,bl,tr),file=sys.stderr)
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parents:
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158 # HTTP body
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
159 balance=clear_text.tell()
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
160 #print(balance,bl,wl,ll,ll-balance,file=sys.stderr)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
161 # Output whatever is left
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
162 _output(cb[balance:balance+wl])
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
163 return
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
164
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
165 def main():
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
166 global _output,TMPFILE,TMPFILENAME,tempfile
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
167 parser = argparse.ArgumentParser(
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
168 description='''Extract records from warc files given length, offset and file triples.
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
169 Input one triple on command line, or
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
170 triples from stdin as tab-delimited lines
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
171 or complete cdx index lines.
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
172 In all cases by 'filename' is meant crawlid/segmentid/type/filename''',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
173 epilog='''Note that if no output flag(s) is/are given,
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
174 the whole WARC record will be output, more efficiently than
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
175 would be the case if all three flags were given.''',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
176 add_help=False,
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
177 conflict_handler='resolve',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
178 formatter_class=HackFormat
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
179 )
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
180 fphelp=('format string for turning 4 filename components into a path, must contain %%s exactly 4 times,\ndefault is "%s"'%FPAT).replace('%s','%%s')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
181 parser.add_argument('--help',help='Show help',action='help')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
182 parser.add_argument('-d','--debug',help='Debug output',action='store_true')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
183 parser.add_argument('-w','--warc',help='output WARC headers',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
184 action='store_true')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
185 parser.add_argument('-h','--headers',help='output HTTP headers',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
186 action='store_true')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
187 parser.add_argument('-b','--body',help='output HTTP body',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
188 action='store_true')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
189 parser.add_argument('-c','--cmd',help='pipes each result thru CMD')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
190 parser.add_argument('-m','--module.function',help='module.function to call with a stream'),
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
191 parser.add_argument('-s','--save',action='store_true',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
192 help="write to a temporary file and output the name")
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
193 parser.add_argument('-f','--fpath',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
194 help=fphelp,
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
195 default=FPAT)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
196 parser.add_argument('-r','--root',nargs='?',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
197 help='File path root, create a copy there if necessary',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
198 default='/beegfs/common_crawl'),
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
199 parser.add_argument('-z','--zipped',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
200 help="output raw gzipped record, ignored if any of -bhw supplied",
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
201 action='store_true')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
202 sg=parser.add_mutually_exclusive_group()
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
203 sg.add_argument('-x','--index',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
204 help='take lines of triples from a cdx index file as input',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
205 action='store_true')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
206 sg.add_argument('length',type=int,
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
207 help='length in bytes of gzipped record',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
208 nargs='?')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
209 parser.add_argument('offset',type=int,
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
210 help='start position in bytes of gzipped record',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
211 nargs='?')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
212 parser.add_argument('filename',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
213 help='pathname of gzipped Common Crawl WARC-format file',
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
214 nargs='?')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
215 # Hack the order of optional and positional in the help output
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
216 parser._action_groups.sort(key=lambda g:g.title)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
217 #parser.print_help()
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
218 pa=parser.parse_args(sys.argv[1:])
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
219 #print(pa,file=sys.stderr)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
220 if pa.length is not None:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
221 # We have to enforce our own check..
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
222 if pa.offset is None or pa.filename is None:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
223 parser.error("length, offset and filename must all be supplied together")
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
224
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
225 buf=bytearray(128*1024*1024)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
226
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
227 whole=not (pa.warc or pa.headers or pa.body)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
228 if pa.save:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
229 _output=_output_tmpfile
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
230 import tempfile
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
231 elif pa.cmd:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
232 _output = _output_subproc
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
233 else:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
234 _output = _output_stdout
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
235 if pa.index:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
236 CDX=regex.compile('length": "([0-9]*)", "offset": "([0-9]*)", "filename": "crawl-data/([^/]*)/segments/([^/]*)/(warc|crawldiagnostics)/(.*\.gz)"') # no robotstxt yet...
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
237 for l in sys.stdin:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
238 m=CDX.search(l)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
239 if m is None:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
240 if l.find('/robotstxt/')>-1:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
241 continue
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
242 print("index line problem: \"%s\""%l,file=sys.stderr,end='')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
243 exit(2)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
244 f=pa.fpath%(m[3:7])
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
245 try:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
246 process(pa,buf,f,
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
247 int(m[2]),int(m[1]),whole)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
248 except Exception as e:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
249 if pa.debug:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
250 import traceback
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
251 traceback.print_exc(file=sys.stderr)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
252 else:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
253 print("Process fail: %s, input line:\n %s"%(e,l),
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
254 file=sys.stderr,end='')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
255 exit(3)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
256 elif pa.length is not None:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
257 print(pa.filename,file=sys.stderr)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
258 process(pa,buf,pa.fpath%tuple(pa.filename.split('/')),
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
259 pa.offset,pa.length,whole)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
260 else:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
261 print("Reading length, offset, filename tab-delimited triples from stdin...",
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
262 file=sys.stderr)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
263 for l in sys.stdin:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
264 try:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
265 (length,offset,filename)=l.rstrip().split('\t')
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
266 length=int(length)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
267 offset=int(offset)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
268 except ValueError as e:
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
269 parser.error('Invalid input line: %s\n "%s"'%(e,l))
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
270 process(pa,buf,pa.fpath%tuple(filename.split('/')),
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
271 offset,length,whole)
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
272
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
273 if __name__ == "__main__":
046dbe557911 write to tmp file implemented
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff changeset
274 main()