Mercurial > hg > cc > cirrus_home
changeset 34:e34cda3e7483
pass through extract args
| author | Henry S. Thompson <ht@inf.ed.ac.uk> |
|---|---|
| date | Thu, 26 Mar 2020 12:23:33 +0000 |
| parents | 4c23b1766692 |
| children | ec99b2d1d2fc |
| files | bin/masterMaster.sh masterJob.sh |
| diffstat | 2 files changed, 8 insertions(+), 5 deletions(-) [+] |
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--- a/bin/masterMaster.sh Tue Mar 24 17:53:35 2020 +0000 +++ b/bin/masterMaster.sh Thu Mar 26 12:23:33 2020 +0000 @@ -1,5 +1,8 @@ #!/bin/bash # This runs on login machine to launch the real job (named by $1) on two machines +# Any further args are passed to parallel echo $(date) Launching master workers for "$@" -seq 1 -1 0 | parallel --will-cite --joblog master_$1.log -S r1i5n1 -S r1i5n0 -N 1 --workdir /dev/shm --transferfile $1_'{}'.txt --transferfile by11s.txt $HOME/bin/$1.sh '{}' -echo $(date) "$@" workers done +task=$1 +shift +seq 1 -1 0 | parallel --will-cite --joblog master_$task.log -S r1i5n1 -S r1i5n0 -N 1 --workdir /dev/shm --transferfile ${task}_'{}'.txt $* $HOME/bin/$task.sh '{}' +echo $(date) $task "$@" workers done
--- a/masterJob.sh Tue Mar 24 17:53:35 2020 +0000 +++ b/masterJob.sh Thu Mar 26 12:23:33 2020 +0000 @@ -1,6 +1,6 @@ #!/bin/bash # Attempt at a master Master job -# Usage: qsub -v t=taskName masterJob.sh +# Usage: qsub -v t=taskName[, x=extras] masterJob.sh # Implies that ~/taskName_{0,1}.txt contain the necessary parameterisation #PBS -l select=2:ncpus=36 #PBS -l place=exclhost @@ -8,10 +8,10 @@ #PBS -V #PBS -A dc007 #PBS -N master - +# #module load mpt cd ${PBS_O_WORKDIR} -bin/masterMaster.sh "$t" +bin/masterMaster.sh "$t" $x