# HG changeset patch
# User Henry S. Thompson <ht@inf.ed.ac.uk>
# Date 1582668847 0
# Node ID 29263ba4236141523852b8f4a31e2f54ae56bc10
# Parent  b0d9fe66ce8a2b2786f5650e5b1d2559ad6f0602
add args for start tar and number of tars

diff -r b0d9fe66ce8a -r 29263ba42361 bin/plinks.sh
--- a/bin/plinks.sh	Tue Feb 25 18:33:22 2020 +0000
+++ b/bin/plinks.sh	Tue Feb 25 22:14:07 2020 +0000
@@ -3,6 +3,9 @@
 echo $(date) $(hostname)
 h=$(hostname)
 hn=${h##*n}
-if [ $hn -eq 0 ]; then echo {013..014}; else echo {015..016}; fi |\
-tr ' ' '\012' |parallel --will-cite -j 30 -N 1 bin/doPlinks.sh ${hn} '{#}' '{}'
+if [ $hn -eq 0 ]
+then seq --format="%03.0f" $1 $2
+else seq --format="%03.0f" $3 $4
+fi |\
+parallel --will-cite -j 48 -N 1 bin/doPlinks.sh ${hn} '{#}' '{}'
 echo $(date) $(hostname) $?
diff -r b0d9fe66ce8a -r 29263ba42361 bin/plinksMaster.sh
--- a/bin/plinksMaster.sh	Tue Feb 25 18:33:22 2020 +0000
+++ b/bin/plinksMaster.sh	Tue Feb 25 22:14:07 2020 +0000
@@ -1,5 +1,5 @@
 #!/bin/bash
 # This runs on 1 machine to launch the real job on two machines
-echo $(date) Launching plinks workers
-parallel --will-cite --nonall -S r1i5n0 -S r1i5n1 bin/plinks.sh
+echo $(date) Launching plinks workers for "$@"
+parallel --will-cite --nonall -S r1i5n0 -S r1i5n1 bin/plinks.sh "$@"
 echo $(date) Workers done
diff -r b0d9fe66ce8a -r 29263ba42361 plinksJob.sh
--- a/plinksJob.sh	Tue Feb 25 18:33:22 2020 +0000
+++ b/plinksJob.sh	Tue Feb 25 22:14:07 2020 +0000
@@ -1,4 +1,5 @@
 #!/bin/bash
+# Usage: qsub -v t1=1stTar,tn=numTars plinksJob.sh
 #PBS -l select=2:ncpus=36
 #PBS -l place=exclhost
 #PBS -l walltime=08:00:00
@@ -9,5 +10,12 @@
 #module load mpt
 
 cd ${PBS_O_WORKDIR}
-bin/plinksMaster.sh
+((n1=tn/2))
+((s1=t1))
+((s2=t1+n1))
+((e1=s2-1))
+((e2=s1+tn-1))
+echo $(seq --format="%03.0f" $s1 $e1),$(seq --format="%03.0f" $s2 $e2)
 
+bin/plinksMaster.sh $s1 $e1 $s2 $e2
+