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view plinksJob.sh @ 1:a4b0359456bc

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switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
author Henry Thompson <ht@markup.co.uk>
date Tue, 18 Feb 2020 21:33:35 +0000
parents 65a56c0d1c1f
children 25ca3505b4d7
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#!/bin/bash
#PBS -l select=2:ncpus=36
#PBS -l place=exclhost
#PBS -l walltime=08:00:00
#PBS -V
#PBS -A dc007
#PBS -N plinks

module load mpt

cd ${PBS_O_WORKDIR}

export MPI_SHEPHERD=true

mpiexec_mpt -ppn 1 -n 2 bin/plinks.sh 2019-35