view bin/runme.sh @ 181:55169996c3bf

add support for multiple calls to srun with a counter
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Fri, 21 Jul 2023 11:38:20 +0100
parents e1bc9d8d688c
children
line wrap: on
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#!/usr/bin/bash
# Invoke this as e.g. sbatch --ntasks=10 -c 20 runme.sh [-m first last] [args for work/bin/_runme.sh]
# It will run on the login node
#  -m i j will launch _runme.sh multiple times with a -a in {first..last}

#SBATCH --time=01:00:00
#SBATCH --partition=standard
#SBATCH --qos=standard
#SBATCH --account=ec184-hst
#SBATCH --job-name runme

export W=/work/dc007/dc007

if [ "$1" = "-m" ]
then
 ss={$2..$3}
 shift; shift; shift;
 echo $(date) Launching $SLURM_JOB_NUM_NODES nodes in $(pwd) for runme -a $ss "$@" from $(hostname) to do $SLURM_NTASKS tasks, $SLURM_CPUS_PER_TASK cpus each 1>&2
 for i in $(eval echo $ss)
 do
  srun --unbuffered -c $SLURM_CPUS_PER_TASK $W/shared/bin/sing $W/hst/bin/_runme.sh -a $i "$@"
  echo $(date) Finished $i
 done
else
 echo $(date) Launching $SLURM_JOB_NUM_NODES nodes in $(pwd) for runme "$@" from $(hostname) to do $SLURM_NTASKS tasks, $SLURM_CPUS_PER_TASK cpus each 1>&2

 srun --unbuffered -c $SLURM_CPUS_PER_TASK $W/shared/bin/sing $W/hst/bin/_runme.sh "$@"
 echo $(date) Finished
fi