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use csing, and _runme_c.sh to get it initialised
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Fri, 08 Sep 2023 21:44:48 +0100
parents ef961d91eea5
children
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#!/bin/bash
# Invoke this as e.g. sbatch --time=5:00:00 --exclusive -N 5 --ntasks-per-node 2 -c 1 masterJob.sh clmp CC-MAIN-2019-35 cdx_tab1
# run clm.py in parallel 
n=$SLURM_NTASKS
c=$SLURM_CPUS_PER_TASK
nodename=$SLURMD_NODENAME
local=$SLURM_LOCALID
node=$SLURM_NODEID
echo $(date) $nodename:$node start

type parallel
#module load gnu-parallel

export PYTHONPATH=$PYTHONPATH:$HOME/lib/python
parallel --will-cite -j $c doCLM.sh "$1" '{}' < $2/$node.txt

echo $(date) $nodename:$node end