Mercurial > hg > cc > cirrus_home
diff bin/doPlinks.sh @ 6:0f494c76a887
refactor to address tarred-up pdfs
author | Henry S. Thompson <ht@inf.ed.ac.uk> |
---|---|
date | Sun, 23 Feb 2020 16:48:34 +0000 |
parents | a4b0359456bc |
children | 25ca3505b4d7 |
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--- a/bin/doPlinks.sh Wed Feb 19 10:41:59 2020 +0000 +++ b/bin/doPlinks.sh Sun Feb 23 16:48:34 2020 +0000 @@ -1,14 +1,17 @@ #!/usr/bin/bash -mkdir -p /dev/shm/x -plinks.py $1 -# while read f -# do -# if plinks.py $f > /dev/shm/x/links_${me}_${mine} 2>/dev/null -# then -# ((mine+=1)) -# else -# echo $f >> /dev/shm/x/badpdfs_$me -# rm -f /dev/shm/x/links_${me}_${mine} -# fi -# done -rsync -a /dev/shm/x/ links +hn=$1 +jn=$2 +tfn=$3 + +mkdir -p /dev/shm/x$hn/${tfn} +cd /dev/shm/x$hn/${tfn} +tar -xf /beegfs/common_crawl/CC-MAIN-2019-35/pdfs/${tfn}.tar '*.pdf' +echo $(date) $hn $(pwd) untarred ${tfn}.tar for job $jn +ls *.pdf | sort --field-separator=_ -k1,1 -k2n,2 | cat -n |\ +plinks.py $tfn || { echo $(date) $hn aborted job $jn for $tfn \[remember to clean up\] ; rm -f /dev/shm/stopJob ; exit 1 ; } +echo $(date) $hn tarring results from job $jn for $tfn in $(pwd) +tar -cf /beegfs/common_crawl/CC-MAIN-2019-35/pdfs/links/${tfn}.tar badpdfs_${tfn} links_${tfn}_* +rm * +cd .. +rmdir ${tfn} +echo $(date) $hn finished job ${jn} for ${tfn}