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comparison bin/plinks.py @ 1:a4b0359456bc

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switch to file loop inside python, assume file index integer in pipe as well as filename, check /dev/shm/stopJob
author Henry Thompson <ht@markup.co.uk>
date Tue, 18 Feb 2020 21:33:35 +0000
parents 65a56c0d1c1f
children 83ed7c5846b2
comparison
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0:65a56c0d1c1f 1:a4b0359456bc
1 #!/lustre/sw/miniconda3/bin/python3 1 #!/lustre/sw/miniconda3/bin/python3
2 import sys,pdfx,traceback 2 import sys,pdfx,traceback
3 def run(): 3 from os import path
4
5 def run(file):
4 global pdf 6 global pdf
5 try: 7 pdf=pdfx.PDFx(file)
6 pdf=pdfx.PDFx(sys.argv[1]) 8 return pdf.get_references_as_dict()
7 links=pdf.get_references_as_dict()
8 except:
9 traceback.print_exc()
10 print("\nFailed: %s"%sys.argv[1],file=sys.stderr)
11 exit(1)
12 for k in links.keys():
13 for l in links[k]:
14 print("%s\t%s"%(k,l))
15 9
16 if sys.argv[1]=='-t': 10 me=sys.argv[1]
17 import timeit 11 with open('/dev/shm/x/badpdfs_%s'%me,'w') as bf:
18 sys.argv.pop(1) 12 for l in sys.stdin:
19 n=sys.argv[1] 13 (fno,f)=l.rstrip().split()
20 sys.argv.pop(1) 14 try:
21 print(timeit.timeit("run()",number=int(n), 15 links=run(file)
22 setup="from __main__ import run"),file=sys.stderr) 16 with open('/dev/shm/x/links_%s'%fno,'w') as of:
23 else: 17 for k in links.keys():
24 run() 18 for l in links[k]:
19 print("%s\t%s\t%s"%(k,l),file=of)
20 except Exception as e:
21 print("%s\t%s\t%s"%(fno,e),file=bf)
22 if (path.exists('/dev/shm/stopJob')):
23 print("Quiting early: %s %s"%(me,fno),file=sys.stderr)
24 exit(1)