Mercurial > hg > cc > cirrus_home
comparison bin/c2t.sh @ 172:72b0420167dc
generalised sbatch front-end to cdx2tsv.py
| author | Henry S. Thompson <ht@inf.ed.ac.uk> |
|---|---|
| date | Thu, 28 Jul 2022 17:24:29 +0100 |
| parents | |
| children | acae526510e2 |
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| 171:c7d57d158331 | 172:72b0420167dc |
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| 1 #!/bin/bash | |
| 2 # Invoke this as e.g. sbatch -N 4 --ntasks=10 -c 15 c2t.sh \ | |
| 3 # CC-MAIN-2019-35 cdx_counts 0 299 1 \ | |
| 4 # '(filename,f.split(/,maxsplit=5)[4][0])' ... | |
| 5 | |
| 6 | |
| 7 #SBATCH --time=01:00:00 | |
| 8 #SBATCH --partition=standard | |
| 9 #SBATCH --qos=standard | |
| 10 #SBATCH --account=ec184-guest | |
| 11 #SBATCH --job-name c2t | |
| 12 | |
| 13 export W=/work/dc007/dc007 | |
| 14 | |
| 15 echo $(date) Launching $SLURM_JOB_NUM_NODES nodes for c2t "$@" from $(hostname) to do $SLURM_NTASKS tasks, $SLURM_CPUS_PER_TASK cpus each | |
| 16 | |
| 17 srun -c $SLURM_CPUS_PER_TASK $W/shared/bin/sing $W/hst/bin/_c2t.sh "$@" | |
| 18 |