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annotate bin/s2t.sh @ 183:efaa10c1e9ea
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author | Henry S. Thompson <ht@inf.ed.ac.uk> |
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date | Fri, 08 Sep 2023 21:42:55 +0100 |
parents | a8e311034d43 |
children | acae526510e2 |
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c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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1 #!/bin/bash |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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2 # Invoke this as e.g. sbatch -N 4 --ntasks=3 -c 5 s2t.sh \ |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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3 # CC-MAIN-2019-35 cdx_counts 0 299 |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
|
4 |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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5 #SBATCH --time=01:00:00 |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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6 #SBATCH --partition=standard |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
|
7 #SBATCH --qos=standard |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
|
8 #SBATCH --account=ec184-guest |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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9 #SBATCH --job-name s2t |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
|
10 |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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11 export W=/work/dc007/dc007 |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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12 |
169 | 13 echo $(date) Launching $SLURM_JOB_NUM_NODES nodes for s2t "$@" from $(hostname) to do $SLURM_NTASKS tasks, $SLURM_CPUS_PER_TASK cpus each |
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c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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14 |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
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15 srun -c $SLURM_CPUS_PER_TASK $W/shared/bin/sing $W/hst/bin/_s2t.sh "$@" |
c3c3dd60b8a8
demo of slurm usage using cdx2tsv.py
Henry S. Thompson <ht@inf.ed.ac.uk>
parents:
diff
changeset
|
16 |