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annotate bin/cdx_segment.sh @ 112:bcea0410143c

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author Henry S. Thompson <ht@inf.ed.ac.uk>
date Mon, 26 Apr 2021 17:17:38 +0000
parents b6a5999d8e06
children
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1 #!/bin/bash
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2 # Invoke this as e.g. sbatch -n 30 -c 10 masterJob.sh cdx_segment
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3 # run cdx_segment.py in parallel
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4 n=$SLURM_NTASKS
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5 c=$SLURM_CPUS_PER_TASK
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6 node=$SLURMD_NODENAME
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7 local=$SLURM_LOCALID
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8 proc=$SLURM_PROCID
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9 echo $(date) $node:$proc start
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11 module load gnu-parallel
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13 PYTHONPATH=$PYTHONPATH:$HOME/lib/python
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14 parallel --will-cite -j $c lib/python/cdx_segment.py 2019-35 15 '{}' < cdx_segment/$proc.txt
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16 echo $(date) $proc end
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