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annotate extractJob.sh @ 172:72b0420167dc

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generalised sbatch front-end to cdx2tsv.py
author Henry S. Thompson <ht@inf.ed.ac.uk>
date Thu, 28 Jul 2022 17:24:29 +0100
parents a598469733d3
children
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a598469733d3 more job scripts
Henry S. Thompson <ht@inf.ed.ac.uk>
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1 #!/bin/bash
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2 # Usage: qsub -v t1=1stTar,tn=numTars plinksJob.sh
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3 #PBS -l select=2:ncpus=36
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4 #PBS -l place=exclhost
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5 #PBS -l walltime=08:00:00
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6 #PBS -V
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7 #PBS -A dc007
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8 #PBS -N hdr
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9
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10 #module load mpt
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11
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12 cd ${PBS_O_WORKDIR}
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13 ((n1=tn/2))
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14 ((s1=t1))
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15 ((s2=t1+n1))
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16 ((e1=s2-1))
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17 ((e2=s1+tn-1))
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18 echo $(seq --format="%03.0f" $s1 $e1),$(seq --format="%03.0f" $s2 $e2)
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20 bin/hdrMaster.sh $s1 $e1 $s2 $e2
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