view master/src/wecu/run_sac.sh @ 64:b91e44355bbf

fix minor argument passing snafus
author Henry S. Thompson <ht@markup.co.uk>
date Wed, 03 Jun 2020 22:08:01 +0000
parents d46c8b12fc04
children e1f61f94b196
line wrap: on
line source

#!/bin/bash
# Usage: run_sac.sh numcores hostsFilename workDir mapper (-h keyHandler) (-f filter) (-k numKeys) resType patType patterns
echo "$@" 1>cmd
cores=$1
hosts=$2
wd=$3
mapper=$4
shift
shift
shift
shift
if [ "$1" = "-h" ]
then
 shift
 keyHandler="$1"
 shift
fi
if [ "$1" = "-f" ]
then
 shift
 filter="$1"
 shift
else
 filter=\"\"
fi
if [ "$1" = "-k" ]
then
 shift
 numKeys="$1"
 shift
fi

# Get quoting right...
worker () {
  set -e
  set -o pipefail
  mkdir -p logs
  mkdir -p res
  f=$1
  shift
  j=$1
  shift
  mapper="$1"
  shift
  filter="$1"
  shift
  keyHandler="$1"
  shift
  shift # we don't need/want the resType either
  me=$(hostname | cut -c 15)
  ff=$(echo $f | cut -f 4,6 -d / | sed 's/CC-MAIN-//;s/\.warc.*$//')
  echo $(date +%Y-%m-%d.%H:%M:%S) $me start $j $ff >>logs/${j}_log
  export PYTHONIOENCODING=utf-8
  { IFS=$'\n' ; stderr=( $( { curl -s -N https://commoncrawl.s3.amazonaws.com/$f | \
   unpigz -dp 1 -c | $filter ./$mapper "$keyHandler" "$@" ; } 2>&1 1>res/${j}.tsv ; ) ) ; unset IFS ; }
  { echo $(date +%Y-%m-%d.%H:%M:%S) $me finished $j $ff
    printf '%s\n' "${stderr[@]}" ; } | sed '2,$s/^/ /' >>logs/${j}_log # hack to try to
      # guarantee atomic entry in the log
}

export -f worker

echo worker '{}' '{#}' "$mapper" "$filter" "$keyHandler" "$@" 1>&2

date 1>&2
parallel \
    --sshloginfile $hosts \
    --retries 3 \
    --transferfile $(which $mapper|sed 's/\(^.*\/\)/\1.\//') \
    --will-cite \
    --jobs $cores \
    --workdir $wd \
    -a input_paths \
    --env worker \
    --return 'logs/{#}_log' --return 'res/{#}.tsv' --cleanup \
    worker '{}' '{#}' "$mapper" "$filter" "$keyHandler" "$@"
res=$?
echo $(date) $res
cat res/*.tsv | sac_reducer.py $1 $numKeys