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annotate master/src/wecu/run_sac.sh @ 58:a3edba8dab11

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author Henry S. Thompson <ht@markup.co.uk>
date Thu, 28 May 2020 09:56:42 +0000
parents master/wecu/run_sac.sh@ac1a20e627a9
children 8332faef25e1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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57
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
parents:
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1 #!/bin/bash
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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2 cores=$1
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
parents:
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3 hosts=$2
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
parents:
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4 wd=$3
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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5 shift
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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6 shift
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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7 shift
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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8 rm -f allout
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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9
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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10 parallel -v \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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11 --sshloginfile $hosts \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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12 --retries 3 \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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13 --transferfile $(which sac_mapper.py|sed 's/sac_/.\/sac_/') \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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14 --will-cite \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
parents:
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15 --jobs $cores \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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16 --workdir $wd \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
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17 -a input_paths \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
parents:
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18 "hostname 1>&2 ; export PYTHONIOENCODING=utf-8; curl -s -N https://commoncrawl.s3.amazonaws.com/{} | unpigz -dp 1 -c | tee >(wc -l 1>&2) | ./sac_mapper.py $* 2>&1" | tee -a allout | grep -v 'Authorized uses only' | \
ac1a20e627a9 from lukasz git repo 2020-05-26 (see ~/src/wecu), then editted,
Henry S. Thompson <ht@markup.co.uk>
parents:
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19 sac_reducer.py "$*"